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1

[IEEE 2011 IEEE Fifth International Conference on Research Challenges in Information Science (RCIS) - Gosier, France (2011.05.19-2011.05.21)] 2011 FIFTH INTERNATIONAL CONFERENCE ON RESEARCH CHALLENGES IN INFORMATION SCIENCE - Using grounded theory for method engineering

Looso, Stefanie, Borner, Rene, Goeken, Matthias

Year:

2011

Language:

english

File:

PDF, 1.90 MB

english, 2011

2

Proteomics of GalÃ¡pagos marine iguanas links function of femoral gland proteins to the immune system

Tellkamp, Frederik, Lang, Franziska, IbÃ¡Ã±ez Ricoma, Alejandro, Abraham, Lena, Quezada, Galo, GÃ¼nther, Stefan, Looso, Mario, Tann, Fabian Jannik, MÃ¼ller, Daniela, Cemic, Franz, Hemberger, JÃ¼rgen,

Journal:

Molecular & Cellular Proteomics

Year:

2020

File:

PDF, 794 KB

2020

3

The NADPH organizers NoxO1 and p47phox are both mediators of diabetes-induced vascular dysfunction in mice

Rezende, Flávia, Moll, Franziska, Walter, Maria, Helfinger, Valeska, Hahner, Fabian, Janetzko, Patrick, Ringel, Christian, Weigert, Andreas, Fleming, Ingrid, Weissmann, Norbert, Kuenne, Carsten, Looso

Journal:

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

4

Connect-four: genomic analyses of regenerating stem cells identifies zygotic Dux factors as tumor initiators

Preussner, Jens, Zhong, Jiasheng, Looso, Mario, Braun, Thomas, Kim, Johnny

Journal:

Molecular & Cellular Oncology

Year:

2019

File:

PDF, 1.14 MB

2019

5

ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

Bentsen, Mette, Goymann, Philipp, Schultheis, Hendrik, Klee, Kathrin, Petrova, Anastasiia, Wiegandt, RenÃ©, Fust, Annika, Preussner, Jens, Kuenne, Carsten, Braun, Thomas, Kim, Johnny, Looso, Mario

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.68 MB

2020

6

PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms

Marc Bruckskotten, Mario Looso, Franz Cemiĉ, Anne Konzer, Jürgen Hemberger, Marcus Krüger, Thomas Braun

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 829 KB

english, 2010

7

Analysis of newly established EST databases reveals similarities between heart regeneration in newt and fish

Thilo Borchardt, Mario Looso, Marc Bruckskotten, Patrick Weis, Julia Kruse, Thomas Braun

Journal:

Year:

2010

Language:

english

File:

PDF, 1.85 MB

english, 2010

8

Transcriptome Analysis of Newt Lens Regeneration Reveals Distinct Gradients in Gene Expression Patterns

Sousounis, Konstantinos, Looso, Mario, Maki, Nobuyasu, Ivester, Clifford J., Braun, Thomas, Tsonis, Panagiotis A., Zhang, Xin

Journal:

Year:

2013

Language:

english

File:

PDF, 979 KB

english, 2013

9

Ade novoassembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration

Mario Looso, Jens Preussner, Konstantinos Sousounis, Marc Bruckskotten…

Journal:

Year:

2013

Language:

english

File:

PDF, 876 KB

english, 2013

10

Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens

Bruckskotten, M., Looso, M., Reinhardt, R., Braun, T., Borchardt, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.58 MB

english, 2012

11

Opening the genetic toolbox of niche model organisms with high throughput techniques: Novel proteins in regeneration as a case study

Journal:

Year:

2014

Language:

english

File:

PDF, 894 KB

english, 2014

12

Advanced Identification of Proteins in Uncharacterized Proteomes by Pulsed in Vivo Stable Isotope Labeling-based Mass Spectrometry

Looso, M., Borchardt, T., Kruger, M., Braun, T.

Journal:

Molecular & Cellular Proteomics

Year:

2010

Language:

english

File:

PDF, 632 KB

english, 2010

13

Spiked-in Pulsed in Vivo Labeling Identifies a New Member of the CCN Family in Regenerating Newt Hearts

Looso, Mario, Michel, Christian S., Konzer, Anne, Bruckskotten, Marc, Borchardt, Thilo, Krüger, Marcus, Braun, Thomas

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

14

[IEEE 2009 13th Enterprise Distributed Object Computing Conference Workshops, EDOCW - Auckland, New Zealand (2009.09.1-2009.09.4)] 2009 13th Enterprise Distributed Object Computing Conference Workshops - Towards an operationalisation of governance and strategy for service identification and design

Borner, Rene, Looso, Stefanie, Goeken, Matthias

Year:

2009

Language:

english

File:

PDF, 148 KB

english, 2009

15

RBM24 Is a Major Regulator of Muscle-Specific Alternative Splicing

Yang, Jiwen, Hung, Lee-Hsueh, Licht, Thomas, Kostin, Sawa, Looso, Mario, Khrameeva, Ekaterina, Bindereif, Albrecht, Schneider, Andre, Braun, Thomas

Journal:

Developmental Cell

Year:

2014

Language:

english

File:

PDF, 3.79 MB

english, 2014

16

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis

Sousounis, Konstantinos, Bhavsar, Rital, Looso, Mario, Krüger, Marcus, Beebe, Jessica, Braun, Thomas, Tsonis, Panagiotis A

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

17

On Marathons and Sprints: An Integrated Quantitative Proteomics and Transcriptomics Analysis of Differences Between Slow and Fast Muscle Fibers

Drexler, H. C. A., Ruhs, A., Konzer, A., Mendler, L., Bruckskotten, M., Looso, M., Gunther, S., Boettger, T., Kruger, M., Braun, T.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.91 MB

english, 2012

18

Quantitative analysis of the TNF-α-induced phosphoproteome reveals AEG-1/MTDH/LYRIC as an IKKβ substrate

Krishnan, Ramesh K., Nolte, Hendrik, Sun, Tianliang, Kaur, Harmandeep, Sreenivasan, Krishnamoorthy, Looso, Mario, Offermanns, Stefan, Krüger, Marcus, Swiercz, Jakub M.

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 2.70 MB

english, 2015

19

Identification of the orphan gene Prod 1 in basal and other salamander families

Geng, Jie, Gates, Phillip B, Kumar, Anoop, Guenther, Stefan, Garza-Garcia, Acely, Kuenne, Carsten, Zhang, Peng, Looso, Mario, Brockes, Jeremy P

Journal:

Year:

2015

Language:

english

File:

PDF, 828 KB

english, 2015

20

Prmt5 is a regulator of muscle stem cell expansion in adult mice

Zhang, Ting, Günther, Stefan, Looso, Mario, Künne, Carsten, Krüger, Marcus, Kim, Johnny, Zhou, Yonggang, Braun, Thomas

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 5.25 MB

english, 2015

21

A Comprehensive Transcriptomic and Proteomic Analysis of Hydra Head Regeneration

Petersen, Hendrik O., Höger, Stefanie K., Looso, Mario, Lengfeld, Tobias, Kuhn, Anne, Warnken, Uwe, Nishimiya-Fujisawa, Chiemi, Schnölzer, Martina, Krüger, Marcus, Özbek, Suat, Simakov, Oleg, Holstein

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

22

MIRPIPE: quantification of microRNAs in niche model organisms

Kuenne, C., Preussner, J., Herzog, M., Braun, T., Looso, M.

Journal:

Year:

2014

Language:

english

File:

PDF, 128 KB

english, 2014

23

High mobility group protein-mediated transcription requires DNA damage marker γ-H2AX

Singh, Indrabahadur, Ozturk, Nihan, Cordero, Julio, Mehta, Aditi, Hasan, Diya, Cosentino, Claudia, Sebastian, Carlos, Krüger, Marcus, Looso, Mario, Carraro, Gianni, Bellusci, Saverio, Seeger, Werner,

Journal:

Year:

2015

Language:

english

File:

PDF, 5.35 MB

english, 2015

24

RNA-Seq analysis of isolated satellite cells in Prmt5 deficient mice

Kuenne, Carsten, Guenther, Stefan, Looso, Mario, Zhang, Ting, Krueger, Marcus, Zhou, Yonggang, Braun, Thomas, Kim, Johnny

Journal:

Year:

2015

Language:

english

File:

PDF, 1020 KB

english, 2015

25

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

Berghoff, Bork A., Konzer, Anne, Mank, Nils N., Looso, Mario, Rische, Tom, Förstner, Konrad U., Krüger, Marcus, Klug, Gabriele, Matic, Ivan

Journal:

Year:

2013

Language:

english

File:

PDF, 2.07 MB

english, 2013

26

The Isl1/Ldb1 Complex Orchestrates Genome-wide Chromatin Organization to Instruct Differentiation of Multipotent Cardiac Progenitors

Caputo, Luca, Witzel, Hagen R., Kolovos, Petros, Cheedipudi, Sirisha, Looso, Mario, Mylona, Athina, van IJcken, Wilfred F.J., Laugwitz, Karl-Ludwig, Evans, Sylvia M., Braun, Thomas, Soler, Eric, Grosv

Journal:

Year:

2015

Language:

english

File:

PDF, 4.09 MB

english, 2015

27

Targeted Ablation of Periostin-Expressing Activated Fibroblasts Prevents Adverse Cardiac Remodeling in Mice

Kaur, Harmandeep, Takefuji, Mikito, Ngai, CY, Carvalho, Jorge, Bayer, Julia, Wietelmann, Astrid, Poetsch, Ansgar, Hölper, Soraya, Conway, Simon J, Möllmann, Helge, Looso, Mario, Troidl, Christian, Off

Journal:

Circulation Research

Year:

2016

Language:

english

File:

PDF, 5.86 MB

english, 2016

28

LimiTT: link miRNAs to targets

Bayer, Julia, Kuenne, Carsten, Preussner, Jens, Looso, Mario

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 720 KB

english, 2016

29

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

Preussner, Jens, Bayer, Julia, Kuenne, Carsten, Looso, Mario

Journal:

Epigenetics & Chromatin

Year:

2015

Language:

english

File:

PDF, 3.36 MB

english, 2015

30

PAFAH1B1 and the lncRNA NONHSAT073641 maintain an angiogenic phenotype in human endothelial cells

Josipovic, Ivana, Fork, Christian, Preussner, Jens, Prior, Kim-Kristin, Iloska, Dijana, Vasconez, Andrea E., Labocha, Sandra, Angioni, Carlo, Thomas, Dominique, Ferreirós, Nerea, Looso, Mario, Pullams

Journal:

Acta Physiologica

Year:

2016

Language:

english

File:

PDF, 761 KB

english, 2016

31

A reverse signaling pathway downstream of Sema4A controls cell migration via Scrib

Sun, Tianliang, Yang, Lida, Kaur, Harmandeep, Pestel, Jenny, Looso, Mario, Nolte, Hendrik, Krasel, Cornelius, Heil, Daniel, Krishnan, Ramesh K., Santoni, Marie-Josée, Borg, Jean-Paul, Bünemann, Moritz

Journal:

The Journal of Cell Biology

Year:

2017

Language:

english

File:

PDF, 2.96 MB

english, 2017

32

Single-cell profiling reveals heterogeneity and functional patterning of GPCR expression in the vascular system

Kaur, H., Carvalho, J., Looso, M., Singh, P., Chennupati, R., Preussner, J., Günther, S., Albarrán-Juárez, J., Tischner, D., Classen, S., Offermanns, S., Wettschureck, N.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 3.39 MB

english, 2017

33

UROPA: a tool for Universal RObust Peak Annotation

Kondili, Maria, Fust, Annika, Preussner, Jens, Kuenne, Carsten, Braun, Thomas, Looso, Mario

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.11 MB

english, 2017

34

OP0073 RNA-SEQ Based Identification of Factors Involved in Knee Joint Regeneration after Induced Osteoarthritis in Notophthalmus Viridescens

Schoenfeld, C., Geyer, M., Schreiyaeck, C., Junker, S., Lange, U., Looso, M., Braun, T., Neumann, E., Mueller-Ladner, U.

Journal:

Annals of the Rheumatic Diseases

Year:

2016

Language:

english

File:

PDF, 65 KB

english, 2016

35

Proteotranscriptomics Reveal Signaling Networks in the Ovarian Cancer Microenvironment.

Worzfeld, Thomas, Finkernagel, Florian, Reinartz, Silke, Konzer, Anne, Adhikary, Till, Nist, Andrea, Stiewe, Thorsten, Wagner, Uwe, Looso, Mario, Graumann, Johannes, Müller, Rolf

Journal:

Molecular & Cellular Proteomics

Year:

2017

Language:

english

File:

PDF, 2.09 MB

english, 2017

36

Long noncoding RNA LISPR1 is required for S1P signaling and endothelial cell function

Josipovic, Ivana, Pflüger, Beatrice, Fork, Christian, Vasconez, Andrea E., Oo, James A., Hitzel, Juliane, Seredinski, Sandra, Gamen, Elisabetta, Heringdorf, Dagmar Meyer zu, Chen, Wei, Looso, Mario, P

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

37

THU0460 Tenascin-C in Joint Regeneration After Induced Osteoarthritis in the Newt Notophthalmus Viridescens

Schoenfeld, C., Susanto, S.A., Geyer, M., Schreiyäck, C., Lange, U., Looso, M., Braun, T., Neumann, E., Müller-Ladner, U.

Journal:

Annals of the Rheumatic Diseases

Year:

2015

Language:

english

File:

PDF, 84 KB

english, 2015

38

A9.2 Tenascin-C expression during knee joint regeneration in the red-spotted NEWT notophthalmus viridescens

Adhi Susanto, Sony, Schönfeld, Christiane, Geyer, Matthias, Schreiyäck, Carina, Lange, Uwe, Looso, Mario, Braun, Thomas, Neumann, Elena, Müller-Ladner, Ulf

Journal:

Annals of the Rheumatic Diseases

Year:

2014

Language:

english

File:

PDF, 76 KB

english, 2014

39

WIlsON: Web-based Interactive Omics VisualizatioN

Schultheis, Hendrik, Kuenne, Carsten, Preussner, Jens, Wiegandt, Rene, Fust, Annika, Bentsen, Mette, Looso, Mario, Kelso, Janet

Journal:

Year:

2018

Language:

english

File:

PDF, 386 KB

english, 2018

40

Single-cell profiling reveals GPCR heterogeneity and functional patterning during neuroinflammation

Tischner, Denise, Grimm, Myriam, Kaur, Harmandeep, Staudenraus, Daniel, Carvalho, Jorge, Looso, Mario, Günther, Stefan, Wanke, Florian, Moos, Sonja, Siller, Nelly, Breuer, Johanna, Schwab, Nicholas, Z

Journal:

Year:

2017

Language:

english

File:

PDF, 4.14 MB

english, 2017

41

Oncogenic Amplification of Zygotic Dux Factors in Regenerating p53-Deficient Muscle Stem Cells Defines a Molecular Cancer Subtype

Preussner, Jens, Zhong, Jiasheng, Sreenivasan, Krishnamoorthy, Günther, Stefan, Engleitner, Thomas, Künne, Carsten, Glatzel, Markus, Rad, Roland, Looso, Mario, Braun, Thomas, Kim, Johnny

Journal:

Year:

2018

Language:

english

File:

PDF, 3.92 MB

english, 2018

42

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

Jia, Guangshuai, Preussner, Jens, Chen, Xi, Guenther, Stefan, Yuan, Xuejun, Yekelchyk, Michail, Kuenne, Carsten, Looso, Mario, Zhou, Yonggang, Teichmann, Sarah, Braun, Thomas

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 6.67 MB

english, 2018

43

aPKC controls endothelial growth by modulating c-Myc via FoxO1 DNA-binding ability

Riddell, Meghan, Nakayama, Akiko, Hikita, Takao, Mirzapourshafiyi, Fatemeh, Kawamura, Takuji, Pasha, Ayesha, Li, Mengnan, Masuzawa, Mikio, Looso, Mario, Steinbacher, Tim, Ebnet, Klaus, Potente, Michae

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.35 MB

english, 2018

44

The histone demethylase PHF8 facilitates alternative splicing of the histocompatibility antigen HLA-G

Leisegang, Matthias S., Gu, Lunda, Preussner, Jens, Günther, Stefan, Hitzel, Juliane, Ratiu, Corina, Weigert, Andreas, Chen, Wei, Schwarz, Eva C., Looso, Mario, Fork, Christian, Brandes, Ralf P.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.22 MB

english, 2019

45

Author Correction: Single-cell profiling reveals heterogeneity and functional patterning of GPCR expression in the vascular system

Kaur, H., Carvalho, J., Looso, M., Singh, P., Chennupati, R., Preussner, J., Günther, S., Albarrán-Juárez, J., Tischner, D., Classen, S., Offermanns, S., Wettschureck, N.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 237 KB

english, 2019

46

Next-generation sequencing for hypothesis-free genomic detection of invasive tropical infections in poly-microbially contaminated, formalin-fixed, paraffin-embedded tissue samples – a proof-of-principle assessment

Frickmann, Hagen, Künne, Carsten, Hagen, Ralf Matthias, Podbielski, Andreas, Normann, Jana, Poppert, Sven, Looso, Mario, Kreikemeyer, Bernd

Journal:

BMC Microbiology

Year:

2019

File:

PDF, 729 KB

2019

47

AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion during Zebrafish Heart Regeneration

Beisaw, Arica, Kuenne, Carsten, GÃ¼nther, Stefan, Dallmann, Julia, Wu, Chi-Chung, Bentsen, Mette, Looso, Mario, Stainier, Didier

Journal:

Circulation Research

Year:

2020

File:

PDF, 1.72 MB

2020

48

The endocannabinoid anandamide has an anti-inflammatory effect on CCL2 expression in vascular smooth muscle cells

PflÃ¼ger-MÃ¼ller, Beatrice, Oo, James A., Heering, Jan, Warwick, Timothy, Proschak, Ewgenij, GÃ¼nther, Stefan, Looso, Mario, Rezende, FlÃ¡via, Fork, Christian, Geisslinger, Gerd, Thomas, Dominique, Gu

Journal:

Basic Research in Cardiology

Year:

2020

File:

PDF, 4.53 MB

2020

49

Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction

Tombor, L, John, D, Glaser, S.F, Luxan, G, Forte, E, Furtado, M, Rosenthal, N, Manavski, Y, Fischer, A, Muhly-Reinholz, M, Looso, M, Acker, T, Harvey, R, Abplanalp, A, Dimmeler, S

Journal:

European Heart Journal

Year:

2020

File:

PDF, 87 KB

2020